Job Description Summary Organization's Summary Statement: The postdoctoral research associate is responsible for developing novel computational methodology for high-throughput sequence genomics tasks, as well as for building efficient and robust implementations of these methods. The primary focus is on the development of methods for single-cell transcriptomic (RNA-seq) and ATAC-seq data, specifically in the single-cell context, though projects related to long-read RNA-sequencing and to foundational algorithmic and data structural questions is also within scope. The postdoctoral research associate leads their own project, as well as to collaborating with other members of the lab. The Patro lab has a strong commitment to open science, and to developing efficient, robust, usable and free and open-source software.
Duties
include: ● Designing and developing novel computational methodologies for the processing and analysis of high-throughput sequencing data ● Writing robust and efficient implementations of novel computational methods in a “high-performance” programming language (Rust, C, C++, Zig) and integrating these new tools with exisitng software developed by the lab ● Preparing, writing, and editing scientific manuscripts ● Collaborating with and co-mentoring PhD students ● Assisting in the writing and preparation of funding proposals (NSF, NIH, and other relevant foundations or opportunities) Minimum qualifications:
Education
PhD in Computer Science or a closely-related field
Experience
Experience
in performing independent research in algorithmic genomics, and communicating scientific results via scientific publications and presentations.
Experience
with handling and analyzing large genomics datasets, as well as experience in developing software in compiled, statically-typed, garbage-collection-free languages (e.g. Rust, C, C++, Zig). Other: Strong written and oral communication skills. Strong interpersonal skills. Physical Demands: Must be capable of maintaining a stationary position for extended periods. Job requires close-up vision for computer work. Preferences: ●
Experience
developing advanced computational methodology for genomics data processing ●
Experience
with and knowledge of compact and succinct data structures ●
Experience
with and knowledge of methods for high-dimenstional statistical inference (e.g. generative graphical models, maximum likelihood inference, Bayesian inference, etc.) ● Knowledge of or willingness to learn the Rust programming language ●
Experience
with data analysis and visualization ● Familiarity with common genomics tools, formats and programs ●
Experience
with standard *-nix command-line tools and idioms ● Familiarity with reproducible scientific workflow systems, such as Nextflow or Snakemake Licenses/ Certifications: N/A Additional Job Details The Patro lab is part of the University of Maryland Institute for Advanced Computer Studies (UMIACS). UMIACS is a multidisciplinary computing research institute led by distinguished researchers and supported by a cutting-edge infrastructure. UMIACS pioneers computational science involving national defense, precision medicine, big data, cybersecurity, language and culture, and more. Required Application Materials: 1. Personal statement (research vision, accomplishments and approach) 2. CV 3. Research portfolio (2-4 papers or mature pre-prints) 4. Software sample (prefferably hosted on GitHub or a similar service) 5. 2 References Best Consideration Date: 10/27/2025 Open Until Filled: Yes Financial Disclosure Required No For more information on Financial Disclosure, please visit Maryland's State Ethics Commission website. Department CMNS-Institute for Advanced Computer Studies Worker Sub-Type Faculty Regular Salary Range $75,000 - $80,000
Benefits
Summary For more information on Regular Faculty benefits, select this link. Background Checks Offers of employment are contingent on completion of a background check. Information reported by the background check will not automatically disqualify anyone from employment. Before any adverse decision, the finalist will have an opportunity to provide information to the University regarding disclosable background check information. The University reserves the right to rescind the offer of employment or otherwise decline or terminate employment if the information reported by the background check is deemed incompatible with the position, regardless of when the background check is completed. Employment Eligibility The successful candidate must complete employment eligibility verification (on Form I-9) by presenting documents that establish identity and work authorization within the timeframe required by federal immigration law, and where applicable, to demonstrate renewed employment authorization. Failure to complete employment eligibility verification or reverification within the timeframe set forth by law may result in suspension or termination of employment. EEO Statement The University of Maryland, College Park is an Equal Opportunity Employer. All qualified applicants will receive equal consideration for employment. Please read the University’s Equal Employment Opportunity Statement of Policy. Title IX Non-Discrimination Notice Resources Learn how military skills translate to civilian opportunities with O*Net Online Search Firm Managed Recruitment There are some positions that are not advertised on this career site as the search is being managed by a Search Firm. Please visit the link below to see these available opportunities: Search Firm Managed Vacancies The University of Maryland, College Park is the state's flagship university and one of the nation's preeminent public research universities. A global leader in research, entrepreneurship and innovation, the university is home to more than 40,700 students, 14,000 faculty and staff, and 388,000 alumni all dedicated to the pursuit of Fearless Ideas. Located just outside Washington, D.C., we discover and share new knowledge every day through our renowned research enterprise and programs in academics, the arts and athletics. And we are committed to social entrepreneurship as the nation’s first “Do Good” campus. EEO Statement The University of Maryland, College Park is an Equal Opportunity Employer. All qualified applicants will receive equal consideration for employment. Please read the University’s Equal Employment Opportunity Statement of Policy. Title IX Non-Discrimination Notice Resources Learn how military skills translate to civilian opportunities with O*Net Online The University works hard to make its websites accessible to any and all users. If you need assistance completing the application process, please contact us at one of the below options: Email: jobs@umd.edu Phone: 301.405.7575 Maryland Relay: Dial 711 This contact information cannot be used to inquire about application status. There are some positions that are not advertised on this career site as the search is being managed by a Search Firm. Please visit the link below to see these available opportunities: Search Firm Managed Opportunities